Juan (Wendy) Zhao, PhD


Research Assistant Professor

Publications


Integration of Omics and Phenotypic Data for Precision Medicine


Juan Zhao, QiPing Feng, Wei-Qi Wei


Methods in Molecular Biology (Clifton, N.J.), vol. 2486, 2022, pp. 19--35


Identifying Potential Therapeutic Applications and Diagnostic Harms of Increased Bilirubin Concentrations: A Clinical and Genetic Approach


Jacy T. Zanussi, Juan Zhao, Chad A. Dorn, Ge Liu, QiPing Feng, WeiQi Wei, Jonathan D. Mosley, C. Michael Stein, Vivian K. Kawai


Clinical Pharmacology and Therapeutics, vol. 111, 2022 Feb, pp. 435--443


Natural language processing to identify lupus nephritis phenotype in electronic health records


Yu Deng, Jennifer A. Pacheco, Anh Chung, Chengsheng Mao, Joshua C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chunhua Weng, Cong Liu, Adam Cordon, Jingzhi Yu, Yacob Tedla, Abel Kho, Rosalind Ramsey-Goldman, Theresa Walunas, Yuan Luo


2021 Dec


American Heart Association Precision Medicine Platform Addresses Challenges in Data Sharing


Laura M. Stevens, James A. de Lemos, Sandeep R. Das, Christine Rutan, Heather M. Alger, Mitchell S.V. Elkind, Juan Zhao, Kritika Iyer, C. Alberto Figueroa, Jennifer L. Hall


Circulation: Cardiovascular Quality and Outcomes, vol. 14, 2021 Sep, pp. e007949


Machine Learning Challenges in Pharmacogenomic Research


Wei-Qi Wei, Juan Zhao, Dan M. Roden, Josh F. Peterson


Clinical Pharmacology and Therapeutics, vol. 110, 2021 Sep, pp. 552--554


DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions


Patrick Wu, Scott D. Nelson, Juan Zhao, Cosby A. Stone, QiPing Feng, Qingxia Chen, Eric A. Larson, Bingshan Li, Nancy J. Cox, C. Michael Stein, Elizabeth J. Phillips, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei


Journal of the American Medical Informatics Association: JAMIA, vol. 28, 2021 Jul, pp. 1421--1430


ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes


Juan Zhao, Monika E. Grabowska, Vern Eric Kerchberger, Joshua C. Smith, H. Nur Eken, QiPing Feng, Josh F. Peterson, S. Trent Rosenbloom, Kevin B. Johnson, Wei-Qi Wei


Journal of Biomedical Informatics, vol. 117, 2021 May, p. 103748


Precision medicine, AI, and the future of personalized health care


Kevin B. Johnson, Wei-Qi Wei, Dilhan Weeraratne, Mark E. Frisse, Karl Misulis, Kyu Rhee, Juan Zhao, Jane L. Snowdon


Clinical and Translational Science, vol. 14, 2021 Jan, pp. 86--93


PheMap a multi-resource knowledge base for high-throughput phenotyping within electronic health records


Neil S. Zheng, QiPing Feng, V. Eric Kerchberger, Juan Zhao, Todd L. Edwards, Nancy J. Cox, C. Michael Stein, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei


Journal of the American Medical Informatics Association: JAMIA, vol. 27, 2020 Nov, pp. 1675--1687


Blockchain-Based Decentralized Accountability and Self-Sovereignty in Healthcare Systems


Sachin Shetty, Xueping Liang, Daniel Bowden, Juan Zhao, Lingchen Zhang


Horst Treiblmaier, Roman Beck, Business {Transformation} through {Blockchain}: {Volume} {II}, Springer International Publishing, Cham, 2019, pp. 119--149


Learning from longitudinal data in electronic health record and genetic data to improve cardiovascular event prediction


Juan Zhao, QiPing Feng, Patrick Wu, Roxana Lupu, Russel A Wilke, Quinn S Wells, Joshua Denny, Wei-Qi Wei


Scientific Reports, vol. 9, 2019, p. 717


Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) LPA


Juan Zhao, QiPing Feng, Patrick Wu, Jeremy L. Warner, Joshua C. Denny, Wei-Qi Wei


PloS One, vol. 14, 2019, pp. e0212112


Mapping ICD-10 and ICD-10-CM Codes to Phecodes: Workflow Development and Initial Evaluation


Patrick Wu, Aliya Gifford, Xiangrui Meng, Xue Li, Harry Campbell, Tim Varley, Juan Zhao, Robert Carroll, Lisa Bastarache, Joshua C. Denny, Evropi Theodoratou, Wei-Qi Wei


JMIR medical informatics, vol. 7, 2019 Nov, pp. e14325


Abstract 14831: Using Machine Learning to Identify Sub-Phenotypes of Cardiovascular Disease for Genetic Association


Zhao Juan, Zhang Yun, Feng Qiping, Wei Wei-qi


Circulation, vol. 140, 2019 Nov, pp. A14831--A14831


Detecting time-evolving phenotypic topics via tensor factorization on electronic health records: Cardiovascular disease case study


Juan Zhao, Yun Zhang, David J. Schlueter, Patrick Wu, Vern Eric Kerchberger, S. Trent Rosenbloom, Quinn S. Wells, QiPing Feng, Joshua C. Denny, Wei-Qi Wei


Journal of Biomedical Informatics, vol. 98, 2019 Oct, p. 103270


Transfer learning for detecting unknown network attacks


Juan Zhao, Sachin Shetty, Jan Wei Pan, Charles Kamhoua, Kevin Kwiat


EURASIP Journal on Information Security, vol. 2019, 2019 Feb, p. 1


A Reliable Data Provenance and Privacy Preservation Architecture for Business-Driven Cyber-Physical Systems Using Blockchain


Xueping Liang, Sachin Shetty, Deepak K Tosh, Juan Zhao, Danyi Li, Jihong Liu


International Journal of Information Security and Privacy (IJISP), vol. 12, 2018, pp. 68--81


Towards decentralized accountability and self-sovereignty in healthcare systems


Xueping Liang, Sachin Shetty, Juan Zhao, Daniel Bowden, Danyi Li, Jihong Liu


International {Conference} on {Information} and {Communications} {Security}, Springer, 2017, pp. 387--398


Towards data assurance and resilience in iot using blockchain


Xueping Liang, Juan Zhao, Sachin Shetty, Danyi Li


{MILCOM} 2017-2017 {IEEE} {Military} {Communications} {Conference} ({MILCOM}), IEEE, 2017, pp. 261--266


Integrating blockchain for data sharing and collaboration in mobile healthcare applications


Xueping Liang, Juan Zhao, S. Shetty, Jihong Liu, Danyi Li


2017 IEEE 28th Annual International Symposium on Personal, Indoor, and Mobile Radio Communications (PIMRC), 2017


Hoeffding Tree Algorithms for Anomaly Detection in Streaming Datasets: A Survey


Asmah Muallem, Sachin Shetty, Jan Wei Pan, Juan Zhao, Biswajit Biswal


Journal of Information Security, vol. 8, 2017, p. 339


Feature-based transfer learning for network security


Juan Zhao, Sachin Shetty, Jan Wei Pan


{MILCOM} 2017-2017 {IEEE} {Military} {Communications} {Conference} ({MILCOM}), IEEE, 2017, pp. 17--22


An {Influence} {Field} {Perspective} on {Predicting} {User}’s {Retweeting} {Behavior}


Yi Shen, Jianjun Yu, Kejun Dong, Juan Zhao, Kai Nan


International {Conference} on {Web}-{Age} {Information} {Management}, Springer, 2015, pp. 3--16


Recommending funding collaborators with scholar social networks


Juan Zhao, Kejun Dong, Jianjun Yu


2014 {International} {Conference} on {Data} {Science} and {Advanced} {Analytics} ({DSAA}), IEEE, 2014, pp. 122--127


DSN: A Knowledge-Based Scholar Networking Practice Towards Research Community


Juan Zhao, Kejun Dong, Jianjun Yu, Wei Hu


2013 {IEEE} 9th {International} {Conference} on e-{Science}, IEEE, 2013, pp. 238--244


A Cross-disciplinary Collaborative Research Platform-Study on Qinghai Lake Joint Research Environment


Juan Zhao, Shuren Li, Jianjun Yu, Kejun Dong, Kai Nan, Baoping Yan


2010 {Sixth} {International} {Conference} on {Signal}-{Image} {Technology} and {Internet} {Based} {Systems}, IEEE, 2010, pp. 211--216


E-Scholar: Improving academic search through combining metasearch with entity extraction


Juan Zhao, Kejun Dong, Le Yang, Kai Nan, Baoping Yan


2009 {IEEE} {Youth} {Conference} on {Information}, {Computing} and {Telecommunication}, IEEE, 2009, pp. 247--250


Download BibTeX

Integration of Omics and Phenotypic Data for Precision Medicine


Juan Zhao, QiPing Feng, Wei-Qi Wei


Methods in Molecular Biology (Clifton, N.J.), vol. 2486, 2022, pp. 19--35


Identifying Potential Therapeutic Applications and Diagnostic Harms of Increased Bilirubin Concentrations: A Clinical and Genetic Approach


Jacy T. Zanussi, Juan Zhao, Chad A. Dorn, Ge Liu, QiPing Feng, WeiQi Wei, Jonathan D. Mosley, C. Michael Stein, Vivian K. Kawai


Clinical Pharmacology and Therapeutics, vol. 111, 2022 Feb, pp. 435--443


Natural language processing to identify lupus nephritis phenotype in electronic health records


Yu Deng, Jennifer A. Pacheco, Anh Chung, Chengsheng Mao, Joshua C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chunhua Weng, Cong Liu, Adam Cordon, Jingzhi Yu, Yacob Tedla, Abel Kho, Rosalind Ramsey-Goldman, Theresa Walunas, Yuan Luo


2021 Dec


American Heart Association Precision Medicine Platform Addresses Challenges in Data Sharing


Laura M. Stevens, James A. de Lemos, Sandeep R. Das, Christine Rutan, Heather M. Alger, Mitchell S.V. Elkind, Juan Zhao, Kritika Iyer, C. Alberto Figueroa, Jennifer L. Hall


Circulation: Cardiovascular Quality and Outcomes, vol. 14, 2021 Sep, pp. e007949


Machine Learning Challenges in Pharmacogenomic Research


Wei-Qi Wei, Juan Zhao, Dan M. Roden, Josh F. Peterson


Clinical Pharmacology and Therapeutics, vol. 110, 2021 Sep, pp. 552--554


DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions


Patrick Wu, Scott D. Nelson, Juan Zhao, Cosby A. Stone, QiPing Feng, Qingxia Chen, Eric A. Larson, Bingshan Li, Nancy J. Cox, C. Michael Stein, Elizabeth J. Phillips, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei


Journal of the American Medical Informatics Association: JAMIA, vol. 28, 2021 Jul, pp. 1421--1430


ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes


Juan Zhao, Monika E. Grabowska, Vern Eric Kerchberger, Joshua C. Smith, H. Nur Eken, QiPing Feng, Josh F. Peterson, S. Trent Rosenbloom, Kevin B. Johnson, Wei-Qi Wei


Journal of Biomedical Informatics, vol. 117, 2021 May, p. 103748


Precision medicine, AI, and the future of personalized health care


Kevin B. Johnson, Wei-Qi Wei, Dilhan Weeraratne, Mark E. Frisse, Karl Misulis, Kyu Rhee, Juan Zhao, Jane L. Snowdon


Clinical and Translational Science, vol. 14, 2021 Jan, pp. 86--93


PheMap a multi-resource knowledge base for high-throughput phenotyping within electronic health records


Neil S. Zheng, QiPing Feng, V. Eric Kerchberger, Juan Zhao, Todd L. Edwards, Nancy J. Cox, C. Michael Stein, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei


Journal of the American Medical Informatics Association: JAMIA, vol. 27, 2020 Nov, pp. 1675--1687


Blockchain-Based Decentralized Accountability and Self-Sovereignty in Healthcare Systems


Sachin Shetty, Xueping Liang, Daniel Bowden, Juan Zhao, Lingchen Zhang


Horst Treiblmaier, Roman Beck, Business {Transformation} through {Blockchain}: {Volume} {II}, Springer International Publishing, Cham, 2019, pp. 119--149


Learning from longitudinal data in electronic health record and genetic data to improve cardiovascular event prediction


Juan Zhao, QiPing Feng, Patrick Wu, Roxana Lupu, Russel A Wilke, Quinn S Wells, Joshua Denny, Wei-Qi Wei


Scientific Reports, vol. 9, 2019, p. 717


Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) LPA


Juan Zhao, QiPing Feng, Patrick Wu, Jeremy L. Warner, Joshua C. Denny, Wei-Qi Wei


PloS One, vol. 14, 2019, pp. e0212112


Mapping ICD-10 and ICD-10-CM Codes to Phecodes: Workflow Development and Initial Evaluation


Patrick Wu, Aliya Gifford, Xiangrui Meng, Xue Li, Harry Campbell, Tim Varley, Juan Zhao, Robert Carroll, Lisa Bastarache, Joshua C. Denny, Evropi Theodoratou, Wei-Qi Wei


JMIR medical informatics, vol. 7, 2019 Nov, pp. e14325


Abstract 14831: Using Machine Learning to Identify Sub-Phenotypes of Cardiovascular Disease for Genetic Association


Zhao Juan, Zhang Yun, Feng Qiping, Wei Wei-qi


Circulation, vol. 140, 2019 Nov, pp. A14831--A14831


Detecting time-evolving phenotypic topics via tensor factorization on electronic health records: Cardiovascular disease case study


Juan Zhao, Yun Zhang, David J. Schlueter, Patrick Wu, Vern Eric Kerchberger, S. Trent Rosenbloom, Quinn S. Wells, QiPing Feng, Joshua C. Denny, Wei-Qi Wei


Journal of Biomedical Informatics, vol. 98, 2019 Oct, p. 103270


Transfer learning for detecting unknown network attacks


Juan Zhao, Sachin Shetty, Jan Wei Pan, Charles Kamhoua, Kevin Kwiat


EURASIP Journal on Information Security, vol. 2019, 2019 Feb, p. 1


A Reliable Data Provenance and Privacy Preservation Architecture for Business-Driven Cyber-Physical Systems Using Blockchain


Xueping Liang, Sachin Shetty, Deepak K Tosh, Juan Zhao, Danyi Li, Jihong Liu


International Journal of Information Security and Privacy (IJISP), vol. 12, 2018, pp. 68--81


Towards decentralized accountability and self-sovereignty in healthcare systems


Xueping Liang, Sachin Shetty, Juan Zhao, Daniel Bowden, Danyi Li, Jihong Liu


International {Conference} on {Information} and {Communications} {Security}, Springer, 2017, pp. 387--398


Towards data assurance and resilience in iot using blockchain


Xueping Liang, Juan Zhao, Sachin Shetty, Danyi Li


{MILCOM} 2017-2017 {IEEE} {Military} {Communications} {Conference} ({MILCOM}), IEEE, 2017, pp. 261--266


Integrating blockchain for data sharing and collaboration in mobile healthcare applications


Xueping Liang, Juan Zhao, S. Shetty, Jihong Liu, Danyi Li


2017 IEEE 28th Annual International Symposium on Personal, Indoor, and Mobile Radio Communications (PIMRC), 2017


Hoeffding Tree Algorithms for Anomaly Detection in Streaming Datasets: A Survey


Asmah Muallem, Sachin Shetty, Jan Wei Pan, Juan Zhao, Biswajit Biswal


Journal of Information Security, vol. 8, 2017, p. 339


Feature-based transfer learning for network security


Juan Zhao, Sachin Shetty, Jan Wei Pan


{MILCOM} 2017-2017 {IEEE} {Military} {Communications} {Conference} ({MILCOM}), IEEE, 2017, pp. 17--22


An {Influence} {Field} {Perspective} on {Predicting} {User}’s {Retweeting} {Behavior}


Yi Shen, Jianjun Yu, Kejun Dong, Juan Zhao, Kai Nan


International {Conference} on {Web}-{Age} {Information} {Management}, Springer, 2015, pp. 3--16


Recommending funding collaborators with scholar social networks


Juan Zhao, Kejun Dong, Jianjun Yu


2014 {International} {Conference} on {Data} {Science} and {Advanced} {Analytics} ({DSAA}), IEEE, 2014, pp. 122--127


DSN: A Knowledge-Based Scholar Networking Practice Towards Research Community


Juan Zhao, Kejun Dong, Jianjun Yu, Wei Hu


2013 {IEEE} 9th {International} {Conference} on e-{Science}, IEEE, 2013, pp. 238--244


A Cross-disciplinary Collaborative Research Platform-Study on Qinghai Lake Joint Research Environment


Juan Zhao, Shuren Li, Jianjun Yu, Kejun Dong, Kai Nan, Baoping Yan


2010 {Sixth} {International} {Conference} on {Signal}-{Image} {Technology} and {Internet} {Based} {Systems}, IEEE, 2010, pp. 211--216


E-Scholar: Improving academic search through combining metasearch with entity extraction


Juan Zhao, Kejun Dong, Le Yang, Kai Nan, Baoping Yan


2009 {IEEE} {Youth} {Conference} on {Information}, {Computing} and {Telecommunication}, IEEE, 2009, pp. 247--250

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